nf-core / nf-core/tools

Default parameters not showing up on NF Tower URL

Open
#1,249 0 comments 0 reactions 0 assignees View on GitHub

Nobody has claimed this yet.

bug
Dominant language
Python
Stars
322
Forks
255
Avg merge
2d 3h
Merged PRs (30d)
5

Description

Hi

I am using nf-core/tools - version 2.1 to build my schema file. The schema file (and json) builds correctly.

However, the default values entered on the web builder do not show up on the NF Tower interface

Terminal nf-core schema build -d .

nfCore_after_cmd_launch

The webBuilder after nf-core schema build -d .

webBuilder

How it looks via NF-Tower

nfTower_after_schema_builder

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Reproduce the issue with nf-core schema build -d . using a schema containing default values, then compare the generated schema and JSON with what appears in the NF-Tower interface. Done means defaults entered in the web builder are preserved and displayed in NF-Tower.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
cli, tooling
Issue type
Bug
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
35/100

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.