nf-core / nf-core/test-datasets

Renovate Dashboard 🤖

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Merged PRs (30d)
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Description

This issue lists Renovate updates and detected dependencies. Read the Dependency Dashboard docs to learn more.
View this repository on the Mend.io Web Portal.

Abandoned Dependencies

The following dependencies have not received updates for an extended period and may be unmaintained.

View abandoned dependencies (2)

[!NOTE]
Packages are marked as abandoned when they exceed the abandonmentThreshold since their last release. Unlike deprecated packages with official notices, abandonment is detected by release inactivity.

Datasource Package Last Updated
pre-commit pre-commit/mirrors-prettier 2023-12-21
pre-commit pre-commit/pre-commit-hooks 2025-08-09

Awaiting Schedule

The following updates are awaiting their schedule. To get an update now, click on a checkbox below.

  • Update dependency prettier to v3.9.6
  • Update GitHub Actions (actions/checkout, j178/prek-action)
  • Update j178/prek-action action to v3
  • 🔐 Create all awaiting schedule PRs at once 🔐

Detected Dependencies

github-actions (2)
.github/workflows/fix-linting.yml (7)
  • actions/checkout v7.0.0@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 → [Updates: v7.0.1]
  • peter-evans/create-or-update-comment v5@e8674b075228eee787fea43ef493e45ece1004c9
  • j178/prek-action v2.0.5@e98a699c41eb69ab013a45817a0406469a748f8d → [Updates: v2.0.6, v3.0.0]
  • peter-evans/create-or-update-comment v5@e8674b075228eee787fea43ef493e45ece1004c9
  • peter-evans/create-or-update-comment v5@e8674b075228eee787fea43ef493e45ece1004c9
  • peter-evans/create-or-update-comment v5@e8674b075228eee787fea43ef493e45ece1004c9
  • peter-evans/create-or-update-comment v5@e8674b075228eee787fea43ef493e45ece1004c9
.github/workflows/lint-code.yml (2)
  • actions/checkout v7.0.0@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 → [Updates: v7.0.1]
  • j178/prek-action v2.0.5@e98a699c41eb69ab013a45817a0406469a748f8d → [Updates: v2.0.6, v3.0.0]
pre-commit (1)
.pre-commit-config.yaml (2)
  • pre-commit/mirrors-prettier v3.1.0
  • pre-commit/pre-commit-hooks v6.0.0
regex (1)
.pre-commit-config.yaml (1)
  • prettier 3.9.5 → [Updates: 3.9.6]
renovate-config (1)
.github/renovate.json5

  • Check this box to trigger a request for Renovate to run again on this repository

Contributor guide

No contributing guide indexed for this repository

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Review .github/workflows/fix-linting.yml, .github/workflows/lint-code.yml, .pre-commit-config.yaml, and .github/renovate.json5, starting with the listed pending dependency updates. Done means the selected updates are applied and the repository's GitHub Actions and pre-commit checks continue to pass.

Written by the indexing model from the issue text.

Assessment

Tech stack
github-actions
Domain
ci-cd, devops
Issue type
Refactor
Difficulty
3/5
Estimated time
1-2 days
Activity status
Quiet
Clarity
Needs clarification
Newbie friendliness
35/100

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