nf-core / nf-core/test-datasets
CAT - Contig Annotation Tool custom database
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Description
As CAT database is quite large, a custom one would be needed to test nf pipelines/wf.
This is apparently feasible to generate a small enought database for CI purposes https://github.com/dutilh/CAT/issues/65, and would already be needed for https://github.com/nf-core/mag/issues/501
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the feasibility discussion in dutilh/CAT#65 and the dependent nf-core/mag#501 issue. Define the smallest CAT database that can support nf pipeline and workflow CI, then verify that it is usable by the relevant test datasets; no repository files or tests are named in this issue.
Written by the indexing model from the issue text.
Assessment
- Domain
- data, testing
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 30/100