nf-core / nf-core/test-datasets
Homo sapiens Genome.gtf test-dataset is invalid
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Description
The genome.gtf file is not sorted and contains features whose parent feature is absent. Surprisingly, this has not caused issues until now.
Issue noticed when writing a module for RiboCode
Paired modules issue: #4188
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by inspecting genome.gtf and the context in paired modules issue #4188. Done means the dataset is sorted and every feature has its parent feature present.
Written by the indexing model from the issue text.
Assessment
- Domain
- testing
- Issue type
- Bug
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Activity status
- Stale
- Clarity
- Clearly specified
- Newbie friendliness
- 45/100