[add] Allow for automated (re)annotation
Open
Nobody has claimed this yet.
enhancement
prio3
- Dominant language
- Python
- Stars
- 46
- Forks
- 23
- PR merge metrics
- No merged PRs in 30d
Description
Description of feature
Pipeline should be able to deal with different annotation for the spatial data
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The issue does not name files, tests, entry points, or an annotation format. Start by locating how the pipeline currently reads spatial-data annotations and review the existing Xenium and Artera input paths. Done means the pipeline can process alternate annotations automatically, with coverage for the supported annotation cases.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics, data
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100