nf-core / nf-core/spatialaxe

[add] Make test runs with different Xenium data version

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enhancement prio2
Dominant language
Python
Stars
46
Forks
23
PR merge metrics
No merged PRs in 30d

Description

Description of feature

It would be good to provide one dataset with different Xenium version. So the pipeline is more bullet proof for backwards compatability.

https://www.10xgenomics.com/support/software/xenium-onboard-analysis/latest/resources/xenium-example-data

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by reviewing the pipeline's existing test data and test-run entry points, then inspect the Xenium example data linked in the issue for version differences. Done means the pipeline test runs cover more than one Xenium data version and pass for each supported version.

Written by the indexing model from the issue text.

Assessment

Domain
data, testing-qa
Issue type
Feature
Difficulty
3/5
Estimated time
1-2 days
Activity status
Quiet
Clarity
Mostly clear
Newbie friendliness
52/100

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