nf-core / nf-core/spatialaxe

[fix] nextflow.config

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enhancement
Dominant language
Python
Stars
46
Forks
23
PR merge metrics
No merged PRs in 30d

Description

Description of feature

Currently there are too many config options, seperate these out into individual configs per tool and include them in the main nextflow.config file

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by reviewing nextflow.config and inventory the current tool-specific options. Separate those options into individual tool configuration files and include them from the main nextflow.config; done means the pipeline retains its configuration while each tool's settings are isolated.

Written by the indexing model from the issue text.

Assessment

Domain
build-system
Issue type
Refactor
Difficulty
3/5
Estimated time
1-2 days
Activity status
Quiet
Clarity
Mostly clear
Newbie friendliness
58/100

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