nf-core / nf-core/spatialaxe

[add] module BIDCell

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module prio3 segmentation
Dominant language
Python
Stars
46
Forks
23
PR merge metrics
No merged PRs in 30d

Description

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by reading the linked BIDCell publication and then inspect spatialaxe's existing pipeline modules and conventions. Determine how BIDCell should fit the Xenium and Artera processing workflow, including its inputs, outputs, and validation criteria; completion should include an integrated module whose behavior matches the publication.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
bioinformatics, data
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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