[bug] RESIZE TIFF awlays runs with cellpose-baysor subworkflow
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bug
- Dominant language
- Python
- Stars
- 46
- Forks
- 23
- PR merge metrics
- No merged PRs in 30d
Description
Description of the bug
the transcripts should match the morphology image dimensions, this should only run in rare cases where there is transcript noise
Command used and terminal output
Relevant files
No response
System information
No response
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Trace the RESIZE TIFF step in the cellpose-baysor subworkflow and inspect how transcript and morphology dimensions are compared. Done means resizing is limited to the rare transcript-noise case, while transcript dimensions otherwise match the morphology image.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- computer-vision, data
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Quiet
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100