Non-mandatory feilds support
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 18
- Forks
- 8
- PR merge metrics
- No merged PRs in 30d
Description
Description of feature
We probably need to create a separate input samplesheet with metadata that can also be submitted to ENA (especially for MAGs) from other checklists as optional. It will require to change genome_uploader to add those fields to manifest. Now pipeline is quite env centric.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by tracing the genome_uploader entry point and how the current input samplesheet and manifest are built. Determine how metadata from other checklists can be represented as optional fields and passed to ENA, especially for MAGs. Done means optional metadata is accepted and included in the submitted manifest without requiring the current environment-centric fields.
Written by the indexing model from the issue text.
Assessment
- Domain
- data-engineering
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Quiet
- Clarity
- Needs clarification
- Newbie friendliness
- 42/100