Submission of a MAG/bin without submitting the assembly or raw reads
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 18
- Forks
- 8
- PR merge metrics
- No merged PRs in 30d
Description
Description of feature
In cases where assembly and raw reads are not submitted, ENA data model allows connection of MAG/bin sample to the source BioSample directly.
To support this, it's required to modify the schema, update genome_uploader and tests.
(Maybe sth else)
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the schema, genome_uploader, and related tests mentioned in the issue. Trace how MAG/bin samples currently connect to assemblies or raw reads, then define the direct BioSample relationship permitted by the ENA data model and update the affected tests to cover submissions without those inputs.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Quiet
- Clarity
- Needs clarification
- Newbie friendliness
- 38/100