Add viral sequence submission support
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 18
- Forks
- 8
- PR merge metrics
- No merged PRs in 30d
Description
Description of feature
Add --kingdom or --domain mode to support prokaryotes/eukaryotes/viruses
https://ena-docs.readthedocs.io/en/latest/faq/pathogen-subs-guide.html
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the ENA pathogen submission guide linked in the issue, then locate how command-line modes are handled for the requested --kingdom or --domain option. The work is complete when submissions support prokaryotes, eukaryotes, and viruses according to the stated ENA guidance.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 52/100