Write a nf-core/mag samplesheet generator for nf-core/seqsubmit
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enhancement
- Dominant language
- Nextflow
- Stars
- 18
- Forks
- 8
- PR merge metrics
- No merged PRs in 30d
Description
Description of feature
For future intagration with nf-core/mag pipeline we need a module that will collect all neccessary stats from mag pipeline and create an input samplesheet for seqsubmit.
Difficulty: Hard
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the nf-core/mag outputs and the input samplesheet requirements for nf-core/seqsubmit. Identify which statistics must be collected and how they map between the two pipelines. Done means a module generates a complete seqsubmit samplesheet from nf-core/mag results, with validation or tests demonstrating the integration.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100