Implement chunking
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 18
- Forks
- 8
- PR merge metrics
- No merged PRs in 30d
Description
Description of feature
We should group assemblies/genomes and run tools for assemblies/genomes in batches. If there would be many inputs - pipeline would be very long
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No file, test, or entry point is named in the issue. Start by locating the pipeline code that groups assemblies or genomes and invokes submission tools, then clarify the intended batch size and behavior. Done means inputs are grouped into batches and the pipeline avoids becoming excessively long.
Written by the indexing model from the issue text.
Assessment
- Domain
- data-engineering
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Quiet
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100