nf-core / nf-core/seqsubmit

Add human contamination removal optional step

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enhancement
Dominant language
Nextflow
Stars
18
Forks
8
PR merge metrics
No merged PRs in 30d

Description

Description of feature

We have decided to have that step in the pipeline

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

The issue names no files, entry points, tool, inputs, outputs, or tests. First inspect the repository's pipeline structure and existing optional steps, then clarify the contamination-removal implementation and acceptance criteria with the maintainers before starting.

Written by the indexing model from the issue text.

Assessment

Domain
bioinformatics, data-engineering
Issue type
Feature
Difficulty
4/5
Estimated time
3-5 days
Activity status
Quiet
Clarity
Needs clarification
Newbie friendliness
35/100

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