metaT assemblies submisison
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Nobody has claimed this yet.
assembly_submit
enhancement
- Dominant language
- Nextflow
- Stars
- 18
- Forks
- 8
- PR merge metrics
- No merged PRs in 30d
Description
Description of feature
We assume metaG data for assembly_uploader and specify ASSEMBLY_TYPE as primary metagenome.
However, metaT assembly is also possible. I think we do not account for that. ENA has docs https://ena-docs.readthedocs.io/en/latest/submit/assembly/metatranscriptome.html
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading the assembly_uploader configuration and how ASSEMBLY_TYPE is set for metaG submissions. Compare the current behavior with the ENA metatranscriptome assembly documentation, then confirm that metaT assemblies can be submitted and that the workflow preserves the appropriate assembly type.
Written by the indexing model from the issue text.
Assessment
- Domain
- data
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Active
- Clarity
- Mostly clear
- Newbie friendliness
- 55/100