nf-core / nf-core/seqinspector
Add reference for mapping to samplesheet
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- Dominant language
- Nextflow
- Stars
- 28
- Forks
- 44
- Avg merge
- 11d 8h
- Merged PRs (30d)
- 2
Description
More for the future really, but in order to be able to map against a reference genome we would ned to add that information to the samplesheet. We will definitely have more than one reference genome per run and per lane. Since updating the samplesheet is easier in the beginning maybe nice to add it already now?
What do you think?
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing how the samplesheet is currently defined and consumed; the issue does not name specific files, tests, or entry points. Clarify how multiple reference genomes should be represented per run and per lane, then define the samplesheet change and its validation criteria with the maintainers.
Written by the indexing model from the issue text.
Assessment
- Domain
- tooling
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100