nf-core / nf-core/seqinspector
Add Librarian for predicting Illumina library-type from base content.
Nobody has claimed this yet.
- Dominant language
- Nextflow
- Stars
- 28
- Forks
- 44
- Avg merge
- 11d 8h
- Merged PRs (30d)
- 2
Description
Description of feature
Thinking this might be a interesting addition to seqinspector. It works mainly with Illumina data from Human or Mouse from what I understand.
There is a MultiQC module (https://docs.seqera.io/multiqc/modules/librarian) but sadly no nf-core module yet. Github: https://github.com/kartva/Librarian
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing how seqinspector integrates QC tools, then read the linked MultiQC Librarian module documentation and the Librarian repository. Confirm the required inputs, outputs, and Illumina library-type predictions before defining the integration; done means the feature is included in the pipeline and its predictions appear in the relevant QC results.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 48/100