nf-core / nf-core/seqinspector
Should there be a pattern matching for `--tools` for riker?
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Description
should there be a pattern matching for
--toolsand a space separted list or are other arguments also likely?
Reply by @maxulysse
I would say given how the modules is written, there is the possibility to have args, and not just a list of tools.
I will create an issue, and re-assess, depending on how bad it is to use it.
I would say, we might want to think about how we want to improve the modules, and maybe have tools as input.
Originally posted by @mashehu in https://github.com/nf-core/seqinspector/pull/251#discussion_r3578832089
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Research direction
Start by reviewing the riker module and the handling of the --tools input. Determine whether it accepts a space-separated tool list or additional arguments, then compare that behavior with the module's intended interface. Done means the input behavior and required changes are clearly decided and addressed.
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Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Quiet
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100