nf-core / nf-core/seqinspector
Rundir parser (and other rundir specific modules) can not handle multiple rundirs
Open
Nobody has claimed this yet.
bug
- Dominant language
- Nextflow
- Stars
- 28
- Forks
- 44
- Avg merge
- 11d 8h
- Merged PRs (30d)
- 2
Description
Description of the bug
Even though different rundirs are specified in the samplesheet, a rundir summary will only be made for one of them (seems to be the last one).
Command used and terminal output
Relevant files
No response
System information
No response
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the rundir parser and the other rundir-specific modules, then reproduce the issue with a samplesheet containing multiple rundirs. Trace why only one rundir produces a summary. Done means a separate rundir summary is generated for every rundir specified in the samplesheet.
Written by the indexing model from the issue text.
Assessment
- Domain
- data
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100