Add minimap2
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enhancement
- Dominant language
- Nextflow
- Stars
- 61
- Forks
- 47
- Avg merge
- 1d 1h
- Merged PRs (30d)
- 1
Description
Description of feature
From @lindenb
Hi All, FYI, in his latest post, Heng Li suggests that minimap2 could be is better at calling variants.
https://lh3.github.io/2025/04/18/short-rna-seq-read-alignment-with-minimap2
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the rnavar pipeline and the minimap2 article linked in the issue. The issue names no files, tests, entry points, or acceptance criteria, so first clarify which workflow stage should use minimap2 and what successful integration and validation would look like.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100