Update `bam_stringtie_merge` with latest fixes from nf-core
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bug
- Dominant language
- Nextflow
- Stars
- 174
- Forks
- 125
- Avg merge
- 1h 17m
- Merged PRs (30d)
- 1
Description
Description of the bug
For reference: https://github.com/nf-core/modules/pull/11180
Command used and terminal output
Relevant files
No response
System information
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Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the linked nf-core/modules pull request 11180 and locating the rnafusion implementation of bam_stringtie_merge. Compare the local module with the fixes described upstream, then run the relevant pipeline checks to confirm the updated module works without regressions.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 55/100