nf-core / nf-core/reportho

Add batch API queries

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enhancement
Dominant language
Nextflow
Stars
11
Forks
7
Avg merge
1h 18m
Merged PRs (30d)
1

Description

Description of feature

Add the option to create batch requests to databases that support them. In particular, this should temporarily merge multiple query IDs.

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by locating the pipeline's database query handling and identifying which supported databases expose batch requests. Clarify how multiple query IDs should be temporarily merged, then define tests or reproducible checks for the requested batch behavior and its completion criteria.

Written by the indexing model from the issue text.

Assessment

Domain
databases
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
30/100

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