Meta issue for Milestone 1.0.0
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 23
- Forks
- 6
- Avg merge
- 1d 9h
- Merged PRs (30d)
- 6
Description
Tasks
- Move assets in nf-core/references-assets from
assets/into./- Update path in
nextflow.configon the pipeline side
- Update path in
- Deal with igenomes_base when generating published files in nf-core/references-assets
- Differentiate the source files and the published files
- Flat structure
- Create a subworkflow in nf-core/modules to store schema and functions
- #99
- Add to schema all items from sarek
- #16
- Add all tools from sarek
- Refine definition and syntax for all elements
- #65
- Describe and version the schema specs
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the unchecked checklist items in this issue and review the linked issues #99, #16, and #65. Read the referenced nextflow.config path change and the related nf-core references and sarek work described in the checklist. Done means the remaining Milestone 1.0.0 tasks are completed and all checklist items are checked.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 15/100