Autogenerate index
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 23
- Forks
- 6
- Avg merge
- 1d 9h
- Merged PRs (30d)
- 6
Description
Description of feature
Autogenerate index in json format so that it can be used as an input via params-file for any other pipeline
(we'd need unique keys within pipelines for igenomes assets (the files, not the genomes))
(thinking bwa vs bwa_index and so on)
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The issue does not name any files, tests, or entry points. Start by locating the pipeline's reference-asset generation and params-file handling, then determine how an autogenerated JSON index should represent assets with unique keys such as bwa and bwa_index. Done means the index is generated in JSON and can be consumed as a params-file by another pipeline.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- json
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100