nf-core / nf-core/references

Create Chromosomes/

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enhancement
Dominant language
Nextflow
Stars
23
Forks
6
Avg merge
1d 9h
Merged PRs (30d)
6

Description

Description of feature

For each WholeGenomeFasta/ we have a Chromosomes/, it'll be nice to generate the Chromosomes/ from the WholeGenomeFasta/

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by locating the workflow that builds each WholeGenomeFasta/ reference and inspect how reference outputs are represented. Determine the expected Chromosomes/ structure and how chromosome sequences should be derived from each whole-genome FASTA. Done means the pipeline generates the corresponding Chromosomes/ output for every WholeGenomeFasta/ reference and its existing checks pass.

Written by the indexing model from the issue text.

Assessment

Domain
bioinformatics
Issue type
Feature
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
35/100

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