Add tools from rnaseq
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 23
- Forks
- 6
- Avg merge
- 1d 9h
- Merged PRs (30d)
- 6
Description
nf-core modules
- bbmap/bbsplit
- custom/catadditionalfasta
- custom/getchromsizes
- gffread
- hisat2/build
- hisat2/extractsplicesites
- kallisto/index
- rsem/preparereference
- salmon/index
- sortmerna
- star/genomegenerate
local modules
- gtf2bed
- gtf_filter
- preprocess_transcripts_fasta_gencode
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by examining the completed nf-core entries such as gffread, hisat2/build, kallisto/index, and star/genomegenerate, then compare them with the unchecked nf-core and local module names. Add the remaining listed tools, including bbmap/bbsplit, sortmerna, gtf2bed, gtf_filter, and preprocess_transcripts_fasta_gencode. Done means the unchecked entries are implemented consistently with the existing modules.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100