Add support for CHM13 Panel of normals
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 23
- Forks
- 6
- Avg merge
- 1d 9h
- Merged PRs (30d)
- 6
Description
Description of feature
We (@robert-a-forsyth ) have generated and optimized some Panel of Normals for tumour-only variant calling for CHM13. Would be great to have these included in nf-core/references.
We currently only have these stored locally, so not sure what the easiest way is to share them?
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the nf-core/references repository and the existing reference-building workflow to determine how CHM13 Panel of Normals are shared and included. Clarify how the locally stored files should be provided and what reference outputs are required. Done means the CHM13 Panel of Normals are reproducibly available through nf-core/references.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100