Auto-generate params.yml for backwards compatibility for old rnaseq versions
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 23
- Forks
- 6
- Avg merge
- 1d 9h
- Merged PRs (30d)
- 6
Description
Description of feature
Just so people can use newly made references simply with an older version of the pipeline.
Mainly thinking about people using the GRCh38 genome from igenomes
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing how params.yml is generated for newly made references and how older pipeline versions consume it; the issue names no implementation file or test. Define compatibility expectations around the GRCh38 reference from igenomes, then verify that a generated params.yml works with the targeted older versions.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 30/100