nf-core / nf-core/proteinfold

Extract tsv parsers from populated_modelcif.py into shared utils.py

Open
#614 0 comments 0 reactions 0 assignees View on GitHub

Nobody has claimed this yet.

duplicate
Dominant language
HTML
Stars
115
Forks
75
PR merge metrics
No merged PRs in 30d

Description

#574 includes a lot of putting the parsing and ranking logic in one place.

It would be good for it to all still be in one place after populated_modelcif.py generated, but will need to get th merge order right

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by reading populated_modelcif.py and shared utils.py, then review issue #574 to understand the parsing and ranking logic and the required merge order. Done means the TSV parsers and related logic are kept in one shared location after populated_modelcif.py is generated, without disrupting the generation order.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
data-engineering
Issue type
Refactor
Difficulty
3/5
Estimated time
1-2 days
Activity status
Quiet
Clarity
Mostly clear
Newbie friendliness
55/100

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.