Interactive PAE viewer in HTML report
Nobody has claimed this yet.
- Dominant language
- HTML
- Stars
- 115
- Forks
- 75
- PR merge metrics
- No merged PRs in 30d
Description
Description of feature
#303 involves adding a PAE plot to the HTML report to support interpretation of outputs. This is particularly relevant for multimers (and multi-domain proteins) which will always be predicted as structures next to each other. However, predicted atomic coordinates are only relevant when they are output with high confidence (represented by PAE matrix). The standard way of representing predictions in the AFDB includes PAE output (eg here).
Once #303 is implemented as a static png, it might be nice to provide some interactivity between PAE plot and structure viewer. A nice open-source implementation of this idea is available here.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing issue #303 and the existing HTML report context, then compare the proposed interaction with the linked pae-viewer implementation. Define how the PAE plot should interact with the structure viewer and what outputs must be supported; done means the HTML report provides a working interactive PAE and structure-viewer experience.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- html
- Domain
- data-visualization, frontend
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100