nf-core / nf-core/proteinannotator
Add FANTASIA (recommended by Earth Biogenome Project)
Nobody has claimed this yet.
- Dominant language
- Nextflow
- Stars
- 15
- Forks
- 12
- Avg merge
- 1d 20h
- Merged PRs (30d)
- 2
Description
Description of feature
from: https://www.earthbiogenome.org/report-on-annotation-recommended-tools
FANTASIA
URL: https://github.com/MetazoaPhylogenomicsLab/FANTASIA
DOI: https://doi.org/10.1093/nargab/lqae078, https://doi.org/10.1101/2024.02.28.582465
GO prediction when used in combination with top GO. Very fast on GPU (e.g. 2 minutes on proteome of one species)
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the linked FANTASIA repository and the proteinannotator pipeline structure; this issue names no files or tests. Define done as a working integration that produces FANTASIA GO predictions within the pipeline, with the reported usage and output behavior validated.
Written by the indexing model from the issue text.
Assessment
- Domain
- data-engineering, machine-learning
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100