nf-core / nf-core/proteinannotator
Add EnTAP (recommended by Earth Biogenome Project)
Nobody has claimed this yet.
- Dominant language
- Nextflow
- Stars
- 15
- Forks
- 12
- Avg merge
- 1d 20h
- Merged PRs (30d)
- 2
Description
Description of feature
from: https://www.earthbiogenome.org/report-on-annotation-recommended-tools
EnTap
URL: https://gitlab.com/PlantGenomicsLab/EnTAP
DOI: https://doi.org/10.1111/1755-0998.13106
Sequence similarity, gene family, ontology, protein domain, contaminant and HGT detection
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the EnTAP project linked in the issue and the proteinannotator workflow structure; no repository files or tests are named. Determine how EnTAP would provide the listed sequence similarity, gene family, ontology, protein domain, contaminant, and HGT annotations. Done means the requested EnTAP integration is defined and supported by appropriate pipeline validation.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100