nf-core / nf-core/proteinannotator
Add ProtNote
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enhancement
- Dominant language
- Nextflow
- Stars
- 15
- Forks
- 12
- Avg merge
- 1d 20h
- Merged PRs (30d)
- 2
Description
Description of feature
ProtNote from Microsoft:
"ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function prediction"
https://github.com/microsoft/protnote
Ideally would add as a bioconda recipe and nf-core/module for broader use, but can start in this pipeline!
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading the linked Microsoft ProtNote project and reviewing the existing annotation pipeline modules. Determine how ProtNote's multimodal protein-function prediction can fit into this pipeline, then verify that the integration works for the pipeline's sequence-level annotation workflow.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics, machine-learning
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100