nf-core / nf-core/proteinannotator
Add EggnogMapper
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 15
- Forks
- 12
- Avg merge
- 1d 20h
- Merged PRs (30d)
- 2
Description
Description of feature
Add Eggnog mapper, like this pipeline: https://github.com/EBI-Metagenomics/assembly-analysis-pipeline/blob/c75b5ff34ee9d2813967bc4b3bcd87c362260dc0/subworkflows/local/functional_annotation.nf#L65
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading the referenced functional_annotation.nf workflow at the linked Eggnog mapper step and then inspect this repository's existing annotation workflow structure. Done means an Eggnog mapper is integrated in the protein annotation pipeline with behavior analogous to the referenced pipeline; the issue names no local files or tests.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100