nf-core / nf-core/proteinannotator
Add the fungtion module for fungal effectors prediction
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 15
- Forks
- 12
- Avg merge
- 1d 20h
- Merged PRs (30d)
- 2
Description
Description of feature
GPU mode available for the module - add the process_gpu label and nf-core m patch.
Add fungtion/fungtion and its setup / download models module.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the existing module structure and the fungtion/fungtion module requirements in the issue. Add the module, its setup/download-models module, GPU support via the process_gpu label, and the nf-core m patch; done means all requested components are present and the module can support fungal effector prediction.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 48/100