Minimac4 with unphased data
Open
Nobody has claimed this yet.
bug
- Dominant language
- Nextflow
- Stars
- 35
- Forks
- 23
- Avg merge
- 16d 3h
- Merged PRs (30d)
- 1
Description
Description of the bug
Minimac4 shouldn't run with unphased data and should produce an error
Command used and terminal output
Relevant files
No response
System information
No response
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating where Minimac4 is invoked and where input phasing status is validated in the pipeline. Run the pipeline with unphased data and compare the current behavior with the expected error; done means unphased input is rejected with a clear error message.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Active
- Clarity
- Needs clarification
- Newbie friendliness
- 38/100