Csv samplesheet with only one individual
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bug
- Dominant language
- Nextflow
- Stars
- 35
- Forks
- 23
- Avg merge
- 16d 3h
- Merged PRs (30d)
- 1
Description
Description of the bug
When only one individual is imputed the output impute.csv wrongfully point to /samples/ folder that does not exist.
Command used and terminal output
Relevant files
No response
System information
No response
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the workflow or process that produces impute.csv and reproduce the one-individual case described in the issue. Trace why its output points to /samples/; done means the generated path is valid for a samplesheet containing only one individual, with a regression test if the project provides one.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Active
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100