Check channel join
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bug
- Dominant language
- Nextflow
- Stars
- 35
- Forks
- 23
- Avg merge
- 16d 3h
- Merged PRs (30d)
- 1
Description
Description of the bug
When joining all channels pannel, map, chunks, region, we need to verify that no region is removed or have missing files.
A dedicated verification process is needed in the initialisation sbwf.
Command used and terminal output
Relevant files
No response
System information
No response
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by examining the initialization sbwf and the joins for the pannel, map, chunks, and region channels. Trace how regions and files are passed through these channels, then establish checks that detect removed regions or missing files and verify the behavior with the pipeline's existing tests or validation steps.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 30/100