Add phase_rare to phasing subworkflow
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enhancement
- Dominant language
- Nextflow
- Stars
- 35
- Forks
- 23
- Avg merge
- 16d 3h
- Merged PRs (30d)
- 1
Description
Description of feature
Shapeit5 has a tool phase_rare that could be usefull for the phasing subworkflow.
This should be an optional step.
See https://odelaneau.github.io/shapeit5/docs/documentation/phase_rare/
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading the phaseimpute phasing subworkflow and the linked Shapeit5 phase_rare documentation. Determine how an optional phase_rare step fits the existing workflow and configuration; done means the step can be enabled without affecting the default phasing path.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 42/100