nf-core / nf-core/phageannotator
Auto generate nf-core/differentialabundance samplesheet using nf-core/phageannotator
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- Dominant language
- Nextflow
- Stars
- 19
- Forks
- 8
- PR merge metrics
- No merged PRs in 30d
Description
The purpose of this enhancement is to ensure that the output of nf-core/phageannotator can be directly input into nf-core/differentialabundance
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The issue names nf-core/phageannotator and nf-core/differentialabundance but no files, tests, or entry points. Start by reviewing the output produced by phageannotator and the samplesheet requirements of differentialabundance. Done means phageannotator can automatically produce a samplesheet accepted by differentialabundance, with validation demonstrated.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100