nf-core / nf-core/phageannotator
Auto generate nf-core/mag samplesheet using nf-core/fetchngs
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- Dominant language
- Nextflow
- Stars
- 19
- Forks
- 8
- PR merge metrics
- No merged PRs in 30d
Description
The purpose of this enhancement is to ensure that the output of nf-core/fetchngs can be directly input into nf-core/mag
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by comparing the output produced by nf-core/fetchngs with the samplesheet format required by nf-core/mag. Trace how phageannotator currently handles pipeline inputs, then define completion as fetchngs output being directly accepted by nf-core/mag without manual conversion.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100