nf-core / nf-core/phageannotator
Add phanta to nf-core/taxprofiler
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- Dominant language
- Nextflow
- Stars
- 19
- Forks
- 8
- PR merge metrics
- No merged PRs in 30d
Description
PHANTA (https://github.com/bhattlab/phanta) can be used to perform phage inclusive taxonomic classification. Currently, there are no tools specifically designed for phage annotation in nf-core/taxprofiler
### Tasks
- [ ] https://github.com/nf-core/phageannotator/issues/71
- [ ] https://github.com/nf-core/phageannotator/issues/72
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading issue 70 and the linked nf-core/phageannotator issues 71 and 72, then inspect how tools are added to nf-core/taxprofiler. Done means PHANTA is integrated into nf-core/taxprofiler for phage-inclusive taxonomic classification and the listed tasks are complete.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100