nf-core / nf-core/phageannotator
Add other phage identification options to nf-core/phageannotator
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- Dominant language
- Nextflow
- Stars
- 19
- Forks
- 8
- PR merge metrics
- No merged PRs in 30d
Description
The purpose of this enhancement is to provide users with another popular tool for virus classification (https://github.com/jiarong/VirSorter2)
### Tasks
- [ ] https://github.com/nf-core/phageannotator/issues/68
- [ ] https://github.com/nf-core/phageannotator/issues/69
- [ ] Add PPR-Meta to nf-core/phageannotator
- [ ] Add viralverify to nf-core/phageannotator
- [ ] Add VIBRANT to nf-core/phageannotator
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the linked issues 68 and 69, then examine how the pipeline currently identifies and annotates phage sequences. The issue lists PPR-Meta, viralverify, and VIBRANT as additional tools to consider. Done means the selected identification options are added to nf-core/phageannotator.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100