nf-core / nf-core/phageannotator
Add mash reference database comparison to nf-core/phageannotator
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- Dominant language
- Nextflow
- Stars
- 19
- Forks
- 8
- PR merge metrics
- No merged PRs in 30d
Description
The goal with this enhancement is to compare de novo identified phage to a reference database to 1) find the closest reference counterpart 2) determine how novel a phage sequence is
### Tasks
- [ ] https://github.com/nf-core/phageannotator/issues/61
- [ ] https://github.com/nf-core/phageannotator/issues/62
- [ ] https://github.com/nf-core/phageannotator/issues/106
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading linked issues 61, 62, and 106 to understand the planned comparison workflow and how the tasks fit together. Done should include comparing de novo phage sequences with a reference database, identifying the closest counterpart, and determining sequence novelty.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics, databases
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 32/100