nf-core / nf-core/phageannotator
Add vcontact3 to nf-core/phageannotator
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- Dominant language
- Nextflow
- Stars
- 19
- Forks
- 8
- PR merge metrics
- No merged PRs in 30d
Description
vcontact3 (https://bitbucket.org/MAVERICLab/vcontact3/src/master/) is the latest version of the popular vcontact tools used to assign taxonomy to viral sequences.
Currently waiting for it to come out of beta.
### Tasks
- [ ] https://github.com/nf-core/phageannotator/issues/55
- [ ] https://github.com/nf-core/phageannotator/issues/56
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the vcontact3 source linked in the issue and the dependent issues #55 and #56. Confirm that vcontact3 is out of beta, then determine the integration requirements for nf-core/phageannotator; done means the tool is added to the pipeline and the listed prerequisites are resolved.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100