nf-core / nf-core/phageannotator
Add nf-core/phageannotator's local modules/subworkflows to nf-core
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- Dominant language
- Nextflow
- Stars
- 19
- Forks
- 8
- PR merge metrics
- No merged PRs in 30d
Description
### Tasks
- [ ] Add coverm/contig to nf-core/modules
- [ ] Add coverm/genome to nf-core/modules
- [ ] Add mash/paste to nf-core/modules
- [ ] Add prodigal/prodigalgv to nf-core/modules
- [ ] Add seqkit/seq to nf-core/modules
- [ ] Add fasta_microdiversity_instrain to nf-core/modules
- [ ] Add fasta_virus_classification_genomad to nf-core/modules
- [ ] Add fasta_virus_quality_checkv to nf-core/modules
- [ ] Update mash/sketch in nf-core/modules
- [ ] Update mash/screen in nf-core/modules
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the nf-core/modules conventions and the existing phageannotator workflow before taking one checklist item. The issue names coverm, mash, prodigal, seqkit, inStrain, geNomad, and CheckV module or subworkflow entries to add or update. Done means all ten checklist tasks are completed and the resulting modules work with nf-core.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Refactor
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100