nf-core / nf-core/phageannotator
Add UHGV classify to nf-core/phageannotator
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- Dominant language
- Nextflow
- Stars
- 19
- Forks
- 8
- PR merge metrics
- No merged PRs in 30d
Description
UHGV classify (https://github.com/snayfach/UHGV) is a tool that can be used to compare de novo phage sequences to a reference database. It finds the most similar UHGV sequences and annotates sequences based on reference properties.
Currently waiting for UHGV paper to be published
### Tasks
- [ ] https://github.com/nf-core/phageannotator/issues/51
- [ ] https://github.com/nf-core/phageannotator/issues/52
- [ ] https://github.com/nf-core/phageannotator/issues/53
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading the UHGV repository and the three linked tasks, issues 51, 52, and 53, to understand the required integration. The work is currently waiting for the UHGV paper to be published; done means UHGV classify is incorporated into nf-core/phageannotator and its related tasks are complete.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100