nf-core / nf-core/phageannotator
Add auto-generate samplesheet to nf-core/mag
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- Dominant language
- Nextflow
- Stars
- 19
- Forks
- 8
- PR merge metrics
- No merged PRs in 30d
Description
Add capacity to auto-generate a phageannotator samplesheet when running nf-core/mag
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by tracing how nf-core/mag accepts or creates its samplesheet and how phageannotator consumes that input. Done means a phageannotator samplesheet can be generated automatically when nf-core/mag runs, with the expected inputs represented correctly; no files or tests are named in the issue.
Written by the indexing model from the issue text.
Assessment
- Domain
- data-engineering
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100