nf-core / nf-core/phageannotator
Add mash taxonomy modules to workflow
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 19
- Forks
- 8
- PR merge metrics
- No merged PRs in 30d
Description
Description of feature
Add mash taxonomy modules to workflow
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The issue names no files, tests, or workflow entry point. Start by locating the pipeline workflow and any existing taxonomy modules, then determine how mash modules should fit into the workflow. Done means the requested mash taxonomy modules are integrated and the workflow validation passes.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100